The New Microbiology. Pascale Cossart

in eukaryotes

      Bacillus-type (rod-shaped) bacteria and their cell walls grow depending on the growth medium composition. Growth of the peptidoglycan, and thus also of the cell wall, is controlled by MreB, a protein anchored to the membrane that is similar to the protein actin in eukaryotes. MreB forms a sort of spiral structure that gives bacilli their elongated form. A protein known as crescentin is responsible for the crescent shape of Caulobacter cells. Bacterial growth has a limit. Once a bacterium reaches a certain size, it splits. This is a highly precise process that uses at least two other molecules similar to actin and tubulin, proteins that were once thought to be present only in eukaryotes. In addition, when a bacterium divides, every vital element of the bacterium, including the chromosome (more specifically the DNA), is duplicated and shared between the two resulting daughter cells. At the final phase of division, the key step in the separation of two daughter cells involves another actin-like protein, FtsA, which attaches to the site of division, FtsZ, a protein similar to the tubulin protein in eukaryotic cells. ParM is another protein similar to eukaryotic actin that is involved in the distribution of plasmid DNA between daughter cells.

Most bacteria produce two apparently identical daughter cells. However, some, such as Caulobacter crescentus, do not. Caulobacter is an aquatic bacterium that has become an impressive model for asymmetrical cell division (Fig. 3). A Caulobacter cell about to divide is immobile, attached by a short stem to a surface such as a rock or the ocean bottom. The unattached end generates a mobile daughter cell that uses a flagellum to propel itself away from the still-attached daughter cell, which will continue to grow and split off more daughters. The mobile cell eventually loses its flagellum and grows a stem that it uses to attach itself to a surface, where it will grow and eventually split off daughter cells of its own.

Are bacteria immortal? Do they have strategies for survival? When stressed by conditions such as desiccation or nutrient deficiency, some bacteria reproduce by forming spores. These are a type of dormant cell that is extremely resistant to heat, cold, dryness, and even some antiseptics. Spores allow bacteria to persist for years or even centuries—and to disseminate (Fig. 4). When a spore arrives in an appropriate environment, it can germinate and resume a normal binary cell division.

      Not all bacteria produce spores, but several that do are considered some of the most dangerous to humans. In late 2001 in the United States, anthrax spores (spores of Bacillus anthracis) sent through the mail as an act of bioterrorism caused skin, intestinal, and lung infections that led to the deaths of five people. Clostridium tetani is another sporeformer. Its spores can remain dormant in the soil for years, but when they enter the anaerobic environment of an open wound, they can reactivate and cause tetanus.

Figure 3. Caulobacter crescentus is used as a model for the study of differentiated cell division. When these bacteria split, they give birth to two slightly different cells, one with a stem and the other with a flagellum.

      Because spores are highly resistant to adverse conditions and can spread easily, it is hard to get rid of them; spores are therefore very dangerous. Take for example the bacterium Clostridium difficile. “C. diff," as it is commonly called, is part of the human intestinal microbiome and is highly resistant to most antibiotics. When a patient is treated with antibiotics, the normal intestinal microbiome changes, leaving the resistant C. difficile to dominate and cause severe colitis and diarrhea. These bacteria are capable of producing spores that can survive almost anywhere for years. Hence, they are becoming a more and more common cause of health care-associated infections, particularly in hospitals.

Figure 4. Bacillus anthracis. Under conditions of stress, some bacteria produce spores that contain the bacteria's complete DNA. Spores can survive indefinitely in nature until more favorable conditions trigger them to germinate and replicate normally again.

      Bacteria also have lesser-known survival strategies. For example, some bacteria can halt their peptidoglycan synthesis in order to produce progeny that lack peptidoglycan and are not recognized by the immune system. These are called L-form bacteria, from the name of the English surgeon Joseph Lister. Like the mycoplasmas described earlier, they are resistant to many antibiotics and can survive in an infected host for a long time, even during treatment.

      It is now possible to watch bacteria divide and to examine the location, the behavior, or the fate of some bacterial proteins. Indeed, new imaging technologies—particularly time-lapse microscopy and superresolution microscopy, both of which use various fluorescent markers—have made it possible to study bacteria in real time. One can observe the precise location of fluorescently linked bacterial proteins (such as the pole or site of division) and see whether they become more intense or disappear during bacterial growth. Combining these imaging techniques with microfluidics—the study of the flow of microquantities of liquids—allows for the real-time observation of bacterial behavior, for example, during changes in cultures or temperature.

      Bacterial cell biology is a new discipline that will allow the understanding of bacterial physiology in previously unobtainable detail. It will undoubtedly result in understanding important issues such as the persistence of pathogenic bacteria or the proliferation of some bacteria in certain environments.

      CHAPTER 3

      The RNA Revolution

      Genes of a bacterium—its genetic ID card that distinguishes it from other bacteria—are, like our own, carried by the DNA of its chromosome. Bacterial chromosomes are usually circular in shape. Generally, bacteria have a single chromosome, though some bacteria such as Vibrio cholerae have two, and other uncommon genera can have more. Borrelia, which is carried by ticks and causes Lyme disease, has many linear chromosomes.

      Many bacteria, in addition to their main chromosomes, also have circular minichromosomes called plasmids. These chromosomes are not essential to bacterial multiplication but nevertheless may play a significant role in bacterial survival and pathogenicity.

      The DNA of a chromosome or a plasmid is a two-stranded polymer. Each strand is a succession of nearly identical components called nucleotides, made of a base plus a sugar, that differ only in their base: A, T, G, or C (adenine, thymine, guanine, and cytosine). The two strands of the DNA twist around each other in a helical ladder owing to the affinity of A for T and of G for C. The genes situated along the chromosome are made up of hundreds, sometimes thousands, of nucleotides. They carry within them the information needed to synthesize proteins. In other words, these genes encode proteins. In between the genes are found “intergenic” sequences of nucleotides that do not encode proteins.

The DNA present in bacteria is either identically copied or “read.” In the first case, the process of replication, both strands of the DNA are duplicated exactly, to be passed on to the daughter cells during cell division. In the second case, during transcription, the information carried on one DNA strand is “read” by a mechanism that creates a similar but different molecule called a transcript RNA molecule, a messenger RNA (mRNA) (Fig. 5). It is called “messenger” because it carries a message from the chromosome that will allow the cell to make a protein. RNAs typically have only one strand of ribonucleotides composed of one base and one sugar, as in DNA, but the four bases in RNA are