Phytomicrobiome Interactions and Sustainable Agriculture. Группа авторов

abundances in plant environments. J. Microbiol. Methods 83: 127–132.

      61 Rastogi, G., Sbodio, A., Tech, J.J. et al. (2012). Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field‐grown lettuce. ISME J. 6: 1812–1822.

      62 Reinhold‐Hurek, B. and Hurek, T. (2011). Living inside plants: bacterial endophytes. Curr. Opin. Plant Biol. 14: 435–443.

      63 Ritpitakphong, U., Falquet, L., Vimoltust, A. et al. (2016). The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen. New Phytol. 210: 1033–1043.

      64 Roume, H., Heintz‐Buschart, A., Muller, E.E.L. et al. (2015). Comparative integrated omics: identification of key functionalities in microbial community‐wide metabolic networks. Biofilms Microb. 1: 15007.

      65 Sengupta, S., Ganguli, S., and Singh, P.K. (2017). Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.). Genomics Data 12: 41–43.

      66 Sessitsch, A., Hardoim, P., Döring, J. et al. (2012). Functional characteristics of an Endophyte community colonizing Rice roots as revealed by metagenomic analysis. Mol. Plant Microbe Interact. 25 (1): 28–36.

      67 Silva, C.C., Hayden, H., Sawbridge, T. et al. (2013). Identification of genes and pathways related to phenol degradation in metagenomic libraries from petroleum refinery wastewater. PLoS One 8 (4): e61811.

      68 Singh, C., Soni, R., Jain, S. et al. (2010). Diversification of nitrogen fixing bacterial community using nifH gene as a biomarker in different geographical soils of Western Indian Himalayas. J. Environ. Biol. 31: 553–556.

      69 Sleator, R.D., Shortall, C., and Hill, C. (2008). Metagenomics. Lett. Appl. Microbiol. 47 (5): 361–366.

      70 Smith, S.E. and Read, D.J. (2008). Mycorrhizal symbiosis. New Phytol. 137: 563–568.

      71 Song, S., Jarvie, T., and Hattori, M. (2013). Our second genome – human metagenome – how next generation sequencer changes our life through microbiology. Adv. Microb. Physiol. 62: 119–124.

      72 Soni, R. (2013). Ecological aspects of metagenomic approach. In: Reshaping Technology for Agricultural Development (eds. A. Kumar and A. Prasad), 135–151. New Delhi: Satish Publishing House.

      73 Soni, R. and Goel, R. (2010). Triphasic approach for assessment of bacterial population in different soil systems. Ekologija 56 (3 & 4): 99–104.

      74  Soni, R., Shaluja, B., and Goel, R. (2010). Bacterial community analysis using temporal gradient gel electrophoresis of 16 S rDNA PCR products of soil metagenomes. Ekologija 56 (3 & 4): 94–98.

      75 Soni, R., Acahrya, C., Premalatha, K., and Goel, R. (2012). Metagenomics technology. In: Biotechnology in Medicine and Agriculture Principles and Practices (eds. A. Kumar et al.), 835–843. New Delhi: IKInternational.

      76 Soni, R., Suyal, D.C., Sai, S., and Goel, R. (2016). Exploration of nifH gene through soil metagenomes of the western Indian Himalayas. 3 Biotech 6 (1): 25.

      77 Soni, R., Kumar, V., Suyal, D.C. et al. (2017). Metagenomics of plant Rhizosphere microbiome. In: Understanding Host‐Microbiome Interactions – an Omics Approach (eds. R.P. Singh, R. Kothari, P.G. Koringa and S.P. Singh), 193–206. Springer Nature Singapore.

      78 Sun, L., Qiu, F., Zhang, X. et al. (2008). Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microb. Ecol. 55: 415–424.

      79 Suyal, D.C., Shukla, A., and Goel, R. (2014). Growth promotory potential of the psychrophilic diazotroph Pseudmonasmigulae S10724 against native Vigna radiata (L.) Wilczek. 3 Biotech 4 (6): 665–668.

      80 Suyal, D.C., Yadav, A., Shouche, Y., and Goel, R. (2015a). Bacterial diversity and community structure of Western Indian Himalayan red kidney bean (Phaseolus vulgaris) rhizosphere as revealed by 16S rRNA gene sequences. Biologia 70 (3): 305–313.

      81 Suyal, D.C., Yadav, A., Shouche, Y., and Goel, R. (2015b). Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.). 3 Biotech 5 (4): 433–441.

      82 Suyal, D.C., Soni, R., Sai, S., and Goel, R. (2016). Microbial inoculants as biofertilizer. In: Microbial Inoculants in Sustainable Agricultural Productivity (ed. D.P. Singh), 311–318. Springer India.

      83 Tanjung, Z.A., Aditama, R., Sudania, W.M. et al. (2017). Metagenomics workflow analysis of endophytic bacteria from oil palm fruits. Int. Symp. Bioinform. Chemometrics Metabolism 835: 012007.

      84 Tian, B.Y., Cao, Y., and Zhang, K.Q. (2015). Metagenomic insights into communities, functions of endophytes, and their associates with infection by root‐knot nematode, Meloidogyne incognita, in tomato roots. Sci. Rep. 5: 17087.

      85 Tomer, S., Suyal, D.C., Rajwar, J. et al. (2017). Isolation and characterization of Phosphate solubilizing bacteria from Western Indian Himalayan soils. 3 Biotech 7 (2): 1–8.

      86 Tsurumaru, H., Okubo, T., Okazaki, K. et al. (2015). Metagenomic analysis of the bacterial community associated with the taproot of sugar beet. Microbes Environ. 30 (1): 63–69.

      87 Turner, T.R., James, E.K., and Poole, P.S. (2013). The plant microbiome. Genome Biol. 14: 209.

      88 Tyson, G.W., Chapman, J., Hugenholtz, P. et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37–43.

      89 Utturkar, S.M., Cude, W.N., Robeson, M.S. et al. (2016). Enrichment of root Endophytic bacteria from Populusdeltoides and single‐cell‐genomics analysis. Appl. Environ. Microbiol. 82 (18): 5698–5708.

      90 Vandenkoornhuyse, P., Baldauf, S.L., Leyval, C. et al. (2002). Extensive fungal diversity in plant roots. Science 295: 2051.

      91 Vandenkoornhuyse, P., Quaiser, A., Duhamel, M. et al. (2015). The importance of the microbiome of the plant holobiont. New Phytol. 206: 1196–1206.

      92  Velázquez‐Sepúlveda, I., Orozco‐Mosqueda, M.C., Prieto‐Barajas, C.M., and Santoyo, G. (2012). Bacterial diversity associated with the rhizosphere of wheat plants (Triticum aestivum): toward a metagenomic analysis. FYTON 81: 81–87.

      93 Waight, K., Pinyakong, O., and Luepromchai, E. (2007). Degradation of phenanthrene on plant leaves by phyllosphere bacteria. J. Gen. Appl. Microbiol. 53: 265–272.

      94 Widder, S., Allen, R.J., Pfeiffer, T. et al. (2016). Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. 10: 2557–2568.

      95 Wrighton, K.H. (2018). Antibacterial drugs: discovering antibiotics through soil metagenomics. Nat. Rev. Drug Discov. 17 (4): 240–241.

      96 Zengler, K. and Palsson, B.O. (2012). A road map for the development of community systems (CoSy) biology. Nat. Rev. Microbiol. 10: 366–372.

      97 Zhao, L. (2010). Genomics: the tale of our other genome. Nature 465: 879–880.

      98 Zhou, J., He, Z., Yang, Y. et al. (2015). High‐throughput metagenomic technologies for complex microbial community analysis: open and closed formats. MBio 6 (1): e02288–e02214.