Genomic and Epigenomic Biomarkers of Toxicology and Disease. Группа авторов

Читать онлайн.
Название Genomic and Epigenomic Biomarkers of Toxicology and Disease
Автор произведения Группа авторов
Жанр Химия
Серия
Издательство Химия
Год выпуска 0
isbn 9781119807698



Скачать книгу

Li, R., Kang, W., and Hao, X.K. (2016). Exosomal microRNA-141 is upregulated in the serum of prostate cancer patients. Onco. Targets Ther. 9: 139–148.

      65 Lobb, R.J., Becker, M., Wen, S.W., Wong, C.S., Wiegmans, A.P., Leimgruber, A., and Moller, A. (2015). Optimized exosome isolation protocol for cell culture supernatant and human plasma. J. Extracell Vesicles 4: 27031.

      66 Logozzi, M., De Milito, A., Lugini, L., Borghi, M., Calabro, L., Spada, M., Perdicchio, M., Marino, M.L., Federici, C., Iessi, E., Brambilla, D., Venturi, G., Lozupone, F., Santinami, M., Huber, V., Maio, M., Rivoltini, L., and Fais, S. (2009). High levels of exosomes expressing CD63 and caveolin-1 in plasma of melanoma patients. PLoS One 4: e5219.

      67 Lu, Q., Zhang, J., Allison, R., Gay, H., Yang, W.X., Bhowmick, N.A., Frelix, G., Shappell, S., and Chen, Y.H. (2009). Identification of extracellular delta-catenin accumulation for prostate cancer detection. Prostate 69: 411–418.

      68 Macfarlane, L.A. and Murphy, P.R. (2010). MicroRNA: Biogenesis, function and role in cancer. Curr. Genom. 11: 537–561.

      69 Madhavan, B., Yue, S., Galli, U., Rana, S., Gross, W., Muller, M., Giese, N.A., Kalthoff, H., Becker, T., Buchler, M.W., and Zoller, M. (2015). Combined evaluation of a panel of protein and miRNA serum-exosome biomarkers for pancreatic cancer diagnosis increases sensitivity and specificity. Int. J. Cancer 136: 2616–2627.

      70 Manterola, L., Guruceaga, E., Gallego Perez-Larraya, J., Gonzalez-Huarriz, M., Jauregui, P., Tejada, S., Diez-Valle, R., Segura, V., Sampron, N., Barrena, C., Ruiz, I., Agirre, A., Ayuso, A., Rodriguez, J., Gonzalez, A., Xipell, E., Matheu, A., Lopez De Munain, A., Tunon, T., Zazpe, I., Garcia-Foncillas, J., Paris, S., Delattre, J.Y., and Alonso, M.M. (2014). A small noncoding RNA signature found in exosomes of GBM patient serum as a diagnostic tool. Neuro Oncol 16: 520–527.

      71 Mathivanan, S., Ji, H., and Simpson, R.J. (2010). Exosomes: Extracellular organelles important in intercellular communication. J. Proteomics 73: 1907–1920.

      72 Melo, S.A., Luecke, L.B., Kahlert, C., Fernandez, A.F., Gammon, S.T., Kaye, J., Lebleu, V.S., Mittendorf, E.A., Weitz, J., Rahbari, N., Reissfelder, C., Pilarsky, C., Fraga, M.F., Piwnica-Worms, D., and Kalluri, R. (2015). Glypican-1 identifies cancer exosomes and detects early pancreatic cancer. Nature 523: 177–182.

      73 Mittelbrunn, M., Gutierrez-Vazquez, C., Villarroya-Beltri, C., Gonzalez, S., Sanchez-Cabo, F., Gonzalez, M.A., Bernad, A., and Sanchez-Madrid, F. (2011). Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells. Nat. Commun. 2: 282.

      74 Mizutani, K., Terazawa, R., Kameyama, K., Kato, T., Horie, K., Tsuchiya, T., Seike, K., Ehara, H., Fujita, Y., Kawakami, K., Ito, M., and Deguchi, T. (2014). Isolation of prostate cancer-related exosomes. Anticancer Res. 34: 3419–3423.

      75 Mobarrez, F., Antoniewicz, L., Bosson, J.A., Kuhl, J., Pisetsky, D.S., and Lundback, M. (2014). The effects of smoking on levels of endothelial progenitor cells and microparticles in the blood of healthy volunteers. PLoS One 9: e90314.

      76 Montecalvo, A., Larregina, A.T., Shufesky, W.J., Stolz, D.B., Sullivan, M.L., Karlsson, J.M., Baty, C.J., Gibson, G.A., Erdos, G., Wang, Z., Milosevic, J., Tkacheva, O.A., Divito, S.J., Jordan, R., Lyons-Weiler, J., Watkins, S.C., and Morelli, A.E. (2012). Mechanism of transfer of functional microRNAs between mouse dendritic cells via exosomes. Blood 119: 756–766.

      77 Mor, E., He, L., Torchinsky, A., and Shomron, N. (2014). MicroRNA-34a is dispensable for p53 function as teratogenesis inducer. Arch. Toxicol. 88: 1749–1763.

      78 Munro, T.P., Magee, R.J., Kidd, G.J., Carson, J.H., Barbarese, E., Smith, L.M., and Smith, R. (1999). Mutational analysis of a heterogeneous nuclear ribonucleoprotein A2 response element for RNA trafficking. J. Biol. Chem. 274: 34389–34395.

      79 Naruse, M., Ono, R., Irie, M., Nakamura, K., Furuse, T., Hino, T., Oda, K., Kashimura, M., Yamada, I., Wakana, S., Yokoyama, M., Ishino, F., and Kaneko-Ishino, T. (2014). Sirh7/Ldoc1 knockout mice exhibit placental P4 overproduction and delayed parturition. Development 141: 4763–4771.

      80 Nawaz, M., Shah, N., Zanetti, B.R., Maugeri, M., Silvestre, R.N., Fatima, F., Neder, L., and Valadi, H. (2018). Extracellular vesicles and matrix remodeling enzymes: the emerging roles in extracellular matrix remodeling, progression of diseases and tissue repair. Cells 7 (10): 167.

      81 Negrier, S., Gravis, G., Perol, D., Chevreau, C., Delva, R., Bay, J.O., Blanc, E., Ferlay, C., Geoffrois, L., Rolland, F., Legouffe, E., Sevin, E., Laguerre, B., and Escudier, B. (2011). Temsirolimus and bevacizumab, or sunitinib, or interferon alfa and bevacizumab for patients with advanced renal cell carcinoma (TORAVA): A randomised phase 2 trial. Lancet. Oncol. 12: 673–680.

      82 Ogata-Kawata, H., Izumiya, M., Kurioka, D., Honma, Y., Yamada, Y., Furuta, K., Gunji, T., Ohta, H., Okamoto, H., Sonoda, H., Watanabe, M., Nakagama, H., Yokota, J., Kohno, T., and Tsuchiya, N. (2014). Circulating exosomal microRNAs as biomarkers of colon cancer. PLoS One 9: e92921.

      83 Okada, C., Yamashita, E., Lee, S.J., Shibata, S., Katahira, J., Nakagawa, A., Yoneda, Y., and Tsukihara, T. (2009). A high-resolution structure of the pre-microRNA nuclear export machinery. Science 326: 1275–1279.

      84 Ono, R., Ishii, M., Fujihara, Y., Kitazawa, M., Usami, T., Kaneko-Ishino, T., Kanno, J., Ikawa, M., and Ishino, F. (2015). Double strand break repair by capture of retrotransposon sequences and reverse-transcribed spliced mRNA sequences in mouse zygotes. Sci. Rep. 5: 12281.

      85 Ono, R., Kobayashi, S., Wagatsuma, H., Aisaka, K., Kohda, T., Kaneko-Ishino, T., and Ishino, F. (2001). A retrotransposon-derived gene, PEG10, is a novel imprinted gene located on human chromosome 7q21. Genomics 73: 232–237.

      86 Ono, R., Kuroki, Y., Naruse, M., Ishii, M., Iwasaki, S., Toyoda, A., Fujiyama, A., Shaw, G., Renfree, M.B., Kaneko-Ishino, T., and Ishino, F. (2011). Identification of tammar wallaby SIRH12, derived from a marsupial-specific retrotransposition event. DNA Res. 18: 211–219.

      87 Ono, R., Nakamura, K., Inoue, K., Naruse, M., Usami, T., Wakisaka-Saito, N., Hino, T., Suzuki-Migishima, R., Ogonuki, N., Miki, H., Kohda, T., Ogura, A., Yokoyama, M., Kaneko-Ishino, T., and Ishino, F. (2006). Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat. Genet. 38: 101–106.

      88 Ono, R., Shiura, H., Aburatani, H., Kohda, T., Kaneko-Ishino, T., and Ishino, F. (2003). Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6. Genome Res. 13: 1696–1705.

      89 Ono, R., Yasuhiko, Y., Aisaki, K.I., Kitajima, S., Kanno, J., and Hirabayashi, Y. (2019). Exosome-mediated horizontal gene transfer occurs in double-strand break repair during genome editing. Commun. Biol. 2: 57.

      90 Ono, R., Yoshioka, Y., Furukawa, Y., Naruse, M., Kuwagata, M., Ochiya, T., Kitajima, S., and Hirabayashi, Y. (2020). Novel hepatotoxicity biomarkers of extracellular vesicle (EV)-associated miRNAs induced by CCl4. Toxicol. Rep. 7: 685–692.

      91 Ostertag, E.M., Prak, E.T., Deberardinis, R.J., Moran, J.V., and Kazazian, H.H.J.R. (2000). Determination of L1 retrotransposition kinetics in cultured cells. Nucleic Acids Res. 28: 1418–1423.

      92 Paggetti, J., Haderk, F., Seiffert, M., Janji, B., Distler, U., Ammerlaan, W., Kim, Y.J., Adam, J., Lichter, P., Solary, E., Berchem, G., and Moussay, E. (2015). Exosomes released by chronic lymphocytic leukemia cells induce the transition of stromal cells into cancer-associated fibroblasts. Blood 126: 1106–1117.

      93 Pan, B.T. and Johnstone, R.M. (1983). Fate of the transferrin receptor during maturation of sheep reticulocytes in vitro: Selective externalization of the receptor. Cell 33: 967–978.

      94 Pan, B.T., Teng, K., Wu, C., Adam, M., and Johnstone, R.M. (1985). Electron microscopic evidence for externalization of the transferrin receptor in vesicular form in sheep reticulocytes. J. Cell Biol. 101: 942–948.

      95 Pegtel, D.M., Cosmopoulos, K., Thorley-Lawson, D.A., Van Eijndhoven, M.A., Hopmans, E.S., Lindenberg, J.L., De Gruijl, T.D., Wurdinger, T., and Middeldorp, J.M. (2010). Functional delivery of viral miRNAs via exosomes. Proc. Natl. Acad. Sci. USA 107: 6328–6333.

      96 Peinado, H., Aleckovic, M., Lavotshkin, S., Matei, I., Costa-Silva, B., Moreno-Bueno, G., Hergueta-Redondo, M., Williams, C., Garcia-Santos, G., Ghajar, C., Nitadori-Hoshino,